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Registro completo
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Biblioteca (s) : |
INIA Treinta y Tres. |
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Fecha : |
15/12/2020 |
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Actualizado : |
08/02/2021 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Autor : |
ROSAS, J.E.; ESCOBAR, M.; MARTÍNEZ, S.; BLANCO, P.H.; PÉREZ DE VIDA, F.; QUERO, G.; GUTIÉRREZ, L.; BONNECARRERE, V. |
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Afiliación : |
JUAN EDUARDO ROSAS CAISSIOLS, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; MAIA ESCOBAR BONORA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; SEBASTIÁN MARTÍNEZ KOPP, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; PEDRO HORACIO BLANCO BARRAL, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; FERNANDO BLAS PEREZ DE VIDA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; GASTÓN QUERO CORRALLO, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; LUCÍA GUTIÉRREZ, Facultad de Agronomía, UDELAR; University of Wisconsin-Madison, USA.; MARIA VICTORIA BONNECARRERE MARTINEZ, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay. |
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Título : |
Epistasis and quantitative resistance to Pyricularia oryzae revealed by GWAS in advanced rice breeding populations. |
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Fecha de publicación : |
2020 |
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Fuente / Imprenta : |
Agriculture 2020, 10(12), 622. Open Access. DOI: https://doi.org/10.3390/agriculture10120622 |
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DOI : |
10.3390/agriculture10120622 |
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Idioma : |
Inglés |
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Notas : |
Article history: Received: 30 October 2020 / Revised: 23 November 2020 / Accepted: 24 November 2020 / Published: 11 December 2020. |
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Contenido : |
Rice blast caused by Pyricularia oryzae is a major rice disease worldwide. Despite the detailed knowledge on major resistance genes available to date, little is known about how these genes interact with quantitative blast resistance loci and with the genetic background. Knowledge on these interactions is crucial for assessing the usefulness of introgressed resistance loci in breeding germplasm. Our goal was to identify quantitative trait loci (QTL) for blast resistance in rice breeding populations and to describe how they interact among each other and with the genetic background. To that end, resistance to blast was mapped by genome-wide association study (GWAS) in two advanced rice breeding subpopulations, one made of 305 indica type inbred lines, and the other of 245 tropical japonica inbred lines. The interactions and main effects of blast resistance loci were assessed in a multilocus model. Well known, major effect blast resistance gene clusters were detected in both tropical japonica (Pii/Pi3/Pi5) and indica (Piz/Pi2/Pi9) subpopulations with the GWAS scan 1. When these major effect loci were included as fixed cofactors in subsequent GWAS scans 2 and 3, additional QTL and more complex genetic architectures were revealed. The multilocus model for the tropical japonica subpopulation showed that Pii/Pi3/Pi5 had significant interaction with two QTL in chromosome 1 and one QTL in chromosome 8, together explaining 64% of the phenotypic variance. In the indica subpopulation a significant interaction among the QTL in chromosomes 6 and 4 and the genetic background, together with Piz/Pi2/Pi9 and QTL in chromosomes 1, 4 and 7, explained 35% of the phenotypic variance. Our results suggest that epistatic interactions can play a major role modulating the response mediated by major effect blast resistance loci such as Pii/Pi3/Pi5. Furthermore, the additive and epistatic effects of multiple QTL bring additional layers of quantitative resistance with a magnitude comparable to that of major effect loci. These findings highlight the need of genetic background-specific validation of markers for molecular assisted blast resistance breeding and provide insights for developing quantitative resistance to blast disease in rice. MenosRice blast caused by Pyricularia oryzae is a major rice disease worldwide. Despite the detailed knowledge on major resistance genes available to date, little is known about how these genes interact with quantitative blast resistance loci and with the genetic background. Knowledge on these interactions is crucial for assessing the usefulness of introgressed resistance loci in breeding germplasm. Our goal was to identify quantitative trait loci (QTL) for blast resistance in rice breeding populations and to describe how they interact among each other and with the genetic background. To that end, resistance to blast was mapped by genome-wide association study (GWAS) in two advanced rice breeding subpopulations, one made of 305 indica type inbred lines, and the other of 245 tropical japonica inbred lines. The interactions and main effects of blast resistance loci were assessed in a multilocus model. Well known, major effect blast resistance gene clusters were detected in both tropical japonica (Pii/Pi3/Pi5) and indica (Piz/Pi2/Pi9) subpopulations with the GWAS scan 1. When these major effect loci were included as fixed cofactors in subsequent GWAS scans 2 and 3, additional QTL and more complex genetic architectures were revealed. The multilocus model for the tropical japonica subpopulation showed that Pii/Pi3/Pi5 had significant interaction with two QTL in chromosome 1 and one QTL in chromosome 8, together explaining 64% of the phenotypic variance. In the indica subpopulation a s... Presentar Todo |
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Palabras claves : |
DISEASE RESISTANCE; GWAS; LEAF BLAST; MAGNAPORTHE ORYZAE; PYRICULARIA ORYZAE; QTL BY GENETIC BACKGROUND INTERACTION; QTL by QTL INTERACTION; RESISTENCIA A ENFERMEDADES. |
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Asunto categoría : |
H20 Enfermedades de las plantas |
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URL : |
http://www.ainfo.inia.uy/digital/bitstream/item/14870/1/agriculture-10-00622.pdf
https://www.mdpi.com/2077-0472/10/12/622
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Marc : |
LEADER 03395naa a2200325 a 4500
001 1061583
005 2021-02-08
008 2020 bl uuuu u00u1 u #d
024 7 $a10.3390/agriculture10120622$2DOI
100 1 $aROSAS, J.E.
245 $aEpistasis and quantitative resistance to Pyricularia oryzae revealed by GWAS in advanced rice breeding populations.$h[electronic resource]
260 $c2020
500 $aArticle history: Received: 30 October 2020 / Revised: 23 November 2020 / Accepted: 24 November 2020 / Published: 11 December 2020.
520 $aRice blast caused by Pyricularia oryzae is a major rice disease worldwide. Despite the detailed knowledge on major resistance genes available to date, little is known about how these genes interact with quantitative blast resistance loci and with the genetic background. Knowledge on these interactions is crucial for assessing the usefulness of introgressed resistance loci in breeding germplasm. Our goal was to identify quantitative trait loci (QTL) for blast resistance in rice breeding populations and to describe how they interact among each other and with the genetic background. To that end, resistance to blast was mapped by genome-wide association study (GWAS) in two advanced rice breeding subpopulations, one made of 305 indica type inbred lines, and the other of 245 tropical japonica inbred lines. The interactions and main effects of blast resistance loci were assessed in a multilocus model. Well known, major effect blast resistance gene clusters were detected in both tropical japonica (Pii/Pi3/Pi5) and indica (Piz/Pi2/Pi9) subpopulations with the GWAS scan 1. When these major effect loci were included as fixed cofactors in subsequent GWAS scans 2 and 3, additional QTL and more complex genetic architectures were revealed. The multilocus model for the tropical japonica subpopulation showed that Pii/Pi3/Pi5 had significant interaction with two QTL in chromosome 1 and one QTL in chromosome 8, together explaining 64% of the phenotypic variance. In the indica subpopulation a significant interaction among the QTL in chromosomes 6 and 4 and the genetic background, together with Piz/Pi2/Pi9 and QTL in chromosomes 1, 4 and 7, explained 35% of the phenotypic variance. Our results suggest that epistatic interactions can play a major role modulating the response mediated by major effect blast resistance loci such as Pii/Pi3/Pi5. Furthermore, the additive and epistatic effects of multiple QTL bring additional layers of quantitative resistance with a magnitude comparable to that of major effect loci. These findings highlight the need of genetic background-specific validation of markers for molecular assisted blast resistance breeding and provide insights for developing quantitative resistance to blast disease in rice.
653 $aDISEASE RESISTANCE
653 $aGWAS
653 $aLEAF BLAST
653 $aMAGNAPORTHE ORYZAE
653 $aPYRICULARIA ORYZAE
653 $aQTL BY GENETIC BACKGROUND INTERACTION
653 $aQTL by QTL INTERACTION
653 $aRESISTENCIA A ENFERMEDADES
700 1 $aESCOBAR, M.
700 1 $aMARTÍNEZ, S.
700 1 $aBLANCO, P.H.
700 1 $aPÉREZ DE VIDA, F.
700 1 $aQUERO, G.
700 1 $aGUTIÉRREZ, L.
700 1 $aBONNECARRERE, V.
773 $tAgriculture 2020, 10(12), 622. Open Access. DOI: https://doi.org/10.3390/agriculture10120622
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INIA Treinta y Tres (TT) |
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| Registros recuperados : 263 | |
| 21. |  | CARRASCO-LETELIER, L.; VÁZQUEZ, D.; D´OTTONE, F.; RESQUÍN, F.; SCOZ, R.; VILARO, F.; RODRIGUEZ, G.; VICENTE, E.; TERRA, J.A. Balance energético de cadenas agro-industriales de interés para la producción de bioenergías. Revista INIA Uruguay, 2013, no. 32, p. 46-50 (Revista INIA; 32)| Tipo: Artículos en Revistas Agropecuarias |
| Biblioteca(s): INIA La Estanzuela; INIA Tacuarembó; INIA Treinta y Tres. |
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| 22. | | DEAMBROSI, E.; ZORRILLA DE SAN MARTÍN, G.; LAUZ, M.; TERRA, J.A.; BLANCO, P.H.; CASTILLO, J.; MÉNDEZ, R.; PÉREZ DE VIDA, F.; MACEDO, I.; URAGA, R.; GONNET, D.; ROVIRA, G.; MARELLA, M.; STIRLING, E.; ZORRILLA, H. Breaking yield barriers of uruguayan rice farmers.[Abstract]. In: Rice Technical Working Group, 37, 2018, Proceedings. Long Beach, California (USA): Rice Technical Working Group, 2018. p. 126-127.| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA Treinta y Tres. |
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| 23. | | HERNÁNDEZ, A.; ROVIRA, G.; BORDAGORRI, P.; ESCALANTE, F.; CASTILLO, J.; MARTÍNEZ, S.; MACEDO, I.; TERRA, J.A. Brechas de rendimiento del cultivo de arroz sobre distinto antecesor de verano para dos variedades de alto potencial. In: Zorrilla, G.; Martínez, S.; Terra, J. A. Saravia, H. (Eds.) Arroz 2018. Montevideo (UY): INIA, 2018. p. 81-83. (INIA Serie Técnica; 246)| Tipo: Capítulo en Libro Técnico-Científico |
| Biblioteca(s): INIA Treinta y Tres. |
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| 24. | | PINTO, P.; SAWCHIK, J.; TERRA, J.A.; AYALA, W.; SILVA, L.; BARRIOS, E.; PIÑEIRO, G. C4P106: Cultivos de servicios: ¿cómo afectan la dinámica de la materia orgánica del suelo?. In: Congreso Argentino de la Ciencia del Suelo San Miguel de Tucumán, 26º., 15 18 Mayo, 2018. p.473-478.| Tipo: Trabajos en Congresos/Conferencias |
| Biblioteca(s): INIA La Estanzuela. |
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| 25. | | JAURENA, M.; SALVO, L.; TERRA, J.A.; AYALA, W.; BARRIOS, E.; LEZAMA, F. Cambios en el largo plazo de características de suelo y vegetación de mejoramientos de campo natural. ln: Reunión del Grupo Técnico en Forrajeras del Cono Sur, Grupo Campos, 22, 2008, Minas, Uruguay Ayala, W.; Lezama, F.; Barrios, E.; Bemhaja, M.; Saravia, H.; Formoso, D.; Boggiano, P., ed. Bioma campos : Innovando para mantener su sustentabilidad y competitividad. Memorias. Minas (Uruguay): Grupo Campos, 2008.| Tipo: Trabajos en Congresos/Conferencias |
| Biblioteca(s): INIA Treinta y Tres. |
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| 26. | | BORGES, A.; GONZÁLEZ-REYMUNDEZ, A.; ERNST, O.; CADENAZZI, M.; TERRA, J.A.; GUTIÉRREZ, L. Can spatial modeling substitute experimental design in agricultural experiments? Crop Science, 2018, v. 59, no. 1, p. 1-10. Article history: Accepted paper, posted 10/05/18. Published online December, 13. 2018.| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Treinta y Tres. |
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| 29. | | BARRO, R.; RUBIO, V.; PRAVIA, V.; QUINCKE, A.; MACEDO, I.; LATTANZI, F.; TERRA, J.A. Carbon sequestration in crop/pasture sequences: a perspective from two long-term experiments in subtropical Uruguay. In: Conference, 21-23 May 2018, Rothamsted, UK. The future of long-term experiments in agricultural science.Conference Programme, 2018. p. 78| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA Treinta y Tres. |
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| 30. | | BALDASSINI, P.; BAETHGEN, W.; CAMBA SANS, G.; QUINCKE, A.; PRAVIA, V.; TERRA, J.A.; MACEDO, F.; PIÑEIRO, G.; PARUELO, J. Carbon stocks and potential sequestration of Uruguayan soils. A road map to a comprehensive characterization of temporal and spatial changes to assess Carbon footprint. Original research. Frontiers in Sustainable Food Systems. 2023, Volume 7. https://doi.org/10.3389/fsufs.2023.1045734 Article history: Received 16 Sep 2022; Accepted 25 May 2023; Published 20 July 2023. -- Correspondence: Dr. Pablo Baldassini, Instituto Nacional de Investigación Agropecuaria, INIA La Estanzuela, Colonia, Uruguay. -- Edited by: Bruno José...| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 31. | | MACEDO, I.; CASTILLO, J.; SALDAIN, N.E.; MARTÍNEZ, S.; BORDAGORRI, P.; HERNANDEZ, J.; TERRA, J.A. Cerrando un ciclo de las rotaciones arroceras: rendimiento del cultivo de arroz y cultivos alternativos. In: Zorrilla, G.; Martínez, S.; Saravia, H. (Eds.) Arroz 2017. Montevideo (UY): INIA, 2017. p. 63-65. (INIA Serie Técnica; 233)| Tipo: Capítulo en Libro Técnico-Científico |
| Biblioteca(s): INIA Treinta y Tres. |
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| 32. | | IRISARRI, P.; PEREYRA, V.; FERNÁNDEZ, A.; TERRA, J.A.; TARLERA, S. CH4 and N2O Emissions in a Rice Field: First Measurements in the Uruguayan Productive System. [Emisiones de CH4 y N2O en un arrozal: primeras medidas en el sistema productivo uruguayo]. [Special Issue 25 Years Agrociencia]. Plant Biology. Agrociencia Uruguay, 2022, vol. 26, NE2, e1083. doi: https://doi.org/10.31285/AGRO.26.1083 -- OPEN ACCESS. Article history: Article originally published in: Agrociencia (Uruguay). 2012;16(2):1-10. doi: https://doi.org/10.31285/AGRO.17.533 -- Correspondence: Silvana Tarlera,
starlera@fq.edu.uy -- Special Issue 25 Years Agrociencia. -- License:...| Tipo: Artículos en Revistas Indexadas Nacionales | Circulación / Nivel : Nacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 33. | | TERRA, J.A.; GARCÍA PRÉCHAC, F. Ciclo de cultivos de las rotaciones. In: TERRA, J.A.; GARCÍA PRÉCHAC, F. (Eds.). Siembra directa y rotaciones forrajeras en las Lomadas del Este: síntesis 1995-2000. Montevideo (Uruguay): INIA, 2001. p. 34-50. (INIA Serie técnica; 125)| Tipo: Capítulo en Libro Técnico-Científico |
| Biblioteca(s): INIA Treinta y Tres. |
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| 34. | | TERRA, J.A.; GARCÍA PRÉCHAC, F. Ciclo de pasturas de las rotaciones In: TERRA, J.A.; GARCÍA PRÉCHAC, F. (Eds.). Siembra directa y rotaciones forrajeras en las Lomadas del Este: síntesis 1995-2000. Montevideo (Uruguay): INIA, 2001. p. 51-78 (INIA Serie Técnica ; 125)| Tipo: Capítulo en Libro Técnico-Científico |
| Biblioteca(s): INIA La Estanzuela; INIA Treinta y Tres. |
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| 36. | | CASTILLO, J.; BONILLA, F.; LUCAS, T.; AMARAL, R.; BORDAGORRI, P.; TERRA, J.A. Comportamiento agronómico de grupos de madurez contrastantes de soja en suelos arroceros del Este. In: PROGRAMA NACIONAL PRODUCCIÓN DE ARROZ; JORNADA ANUAL ARROZ-SOJA, 2013, INIA TREINTA Y TRES, UY. Arroz-soja: resultados experimentales 2012-2013. Treinta y Tres: INIA, 2013. "cap. 9; p. 4-6" (INIA Serie Actividades de Difusión ; 713)| Biblioteca(s): INIA Tacuarembó; INIA Treinta y Tres. |
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| 38. | | MACEDO, I.; GASO, D.; BORDAGORRI, A.; TERRA, J.A.; SAWCHIK, J. Comportamiento agronómico de grupos de madurez y poblaciones contrastantes de soja en suelos arroceros del Este sin limitantes nutricionales. ln: [JORNADA ANUAL] ARROZ-SOJA, 2015, Treinta y Tres, UY. Resultados experimentales 2014-2015. Treinta y Tres: INIA, 2015. Cap. 6, p. 4-6. (INIA Serie Actividades de Difusión; 748)| Biblioteca(s): INIA Treinta y Tres. |
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| Registros recuperados : 263 | |
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